Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs34437034 chr11:47066906 CT/C 7.93E-12 288 25.57 28.03 10.82 KM Plot
KIRP rs34452876 chr6:27376162 TGAA/T 2.16E-8 287 25.5 28.57 9.77 KM Plot
KIRP rs34455929 chr16:1024669 A/G 2.54E-9 278 26.77 22.68 10.97 KM Plot
KIRP rs34462345 chr19:33614648 T/TA 4.46E-9 276 26.37 23.68 11.2 KM Plot
KIRP rs34505829 chr6:28133239 A/T 1.42E-8 288 25.58 29.2 9.77 KM Plot
KIRP rs34526810 chr16:89728475 G/A 3.47E-8 281 26.2 25.63 9.77 KM Plot
KIRP rs34543938 chr6:27624640 A/G 1.21E-8 288 25.58 29.2 9.77 KM Plot
KIRP rs34546498 chr6:26961280 C/T 1.65E-8 287 25.58 29.77 9.77 KM Plot
KIRP rs34546986 chr6:28362309 G/A 2.0E-8 284 25.57 26.38 9.77 KM Plot
KIRP rs34566881 chr15:39554097 C/T 0 287 23.62 30.32 4.63 KM Plot
KIRP rs34573979 chr6:27480526 C/T 1.28E-8 289 25.6 29.2 9.77 KM Plot
KIRP rs34588114 chr6:28080628 C/A 1.42E-8 288 25.58 29.2 9.77 KM Plot
KIRP rs34597582 chr16:1018816 C/T 2.43E-9 277 26.7 24.13 11.37 KM Plot
KIRP rs34656745 chr3:16043974 CA/C 9.13E-5 284 20.4 27.88 25.57 KM Plot
KIRP rs34661125 chr6:28281894 G/A 0 289 25.6 26.58 9.38 KM Plot